Xrefs have been re-run for Human, Mouse, Rat and Chicken.
Read more...
Duplicated entries of 10 arrays and 2098146 probes have been deleted from affy_array and affy_probe tables. There were no feature for the arrays.
The compara orthology build has been updated to include the new Opossum genome, and chimp dnafrag names have been changed to take account of the re-numbering of the Chimp chromosomes (see Chimp news for more information).
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All variation databases now include the new consequence_type 'REGULATORY_REGION'.
Features which have accompanying Gene locations, e.g. some AffyProbes, now display a table of gene names and descriptions at the top of the view page. See an example....
Click on a chromosome for a closer view
Ensembl Mouse is based on the NCBI m34 mouse assembly (freeze May 17, 2005, strain C57BL/6J).
The Mouse Genome Sequencing Consortium is a joint project between
The Whitehead Institute/MIT Center for Genome Research,
The Washington University Genome Sequencing Center,
The Wellcome Trust Sanger Institute
and EMBL - EBI to provide the Mouse genome sequence to the world.
We work closely with other Mouse groups to provide an integrated resource (see below for credits).
This site provides a full Ensembl gene build for the above assembly. There are some major changes in the assembly; for more details see the NCBI build statistics . The un-assembled pieces of the Y-chromosome will probably be re-integrated in the upcoming build 35.
Modifications to the systems have further improved the gene set. More than 93% of known genes from build m33 retain the same Ensembl gene ids in this release. Of novel genes only 55% of identifiers are retained, half of those lost were pseudogenes.
| Assembly: | NCBI m34, May 2005 |
| Genebuild: | Ensembl, July 2005 |
| Database version: | 35.34c |
| Gene predictions (incl. 1383 pseudogenes): | 26,996 |
| Genscan gene predictions: | 81,307 |
| Gene exons: | 245,205 |
| Gene transcripts: | 37,854 |
| Base Pairs: | 2,267,775,209 |
| Golden Path Length: | 2,604,449,128 |
| Most common InterPro domains: | Top 40 Top 500 |
© 2009 WTSI / EBI. Ensembl is available to download for public use - please see the code licence for details.
