Ensembl .

 

These pages provide step-by-step instructions for installing your own version of the Ensembl web site. They are intended to be complete; that is, if you install the site simply by following these instructions, it should work.

This document with each new release, so it should always be up-to-date.

If you find any omissions, errors, or just confusing bits in the instructions, please send an email to webmaster@ensembl.org, and we'll try to fix things.

Summary of Instructions

There are four main sections to these instructions:

Site Structure
Describes the directory structure of the site, and what the various sections do.
Build/Install
How to install all the components that make up the site.
Configuration
Instructions for configuring the site for your local set-up.
Running the site
How to start up, shut down, and generally maintain the site.

Before you start

Running the Ensembl web site can be rather taxing on hardware. At a minimum you will need:

  • A UNIX-like OS (e.g. Tru64, Solaris, Linux, OS X, etc.)
  • Approx. 160 Gigabytes of free hard-disk to hold a complete set of MySQL databases, and about the same again for downloading and unpacking the data. Depending on your requirements, you may wish to only install data for one or more species. The size requirements are roughly:
Species Data size (Gb)
Anopheles gambiae 2.2
Apis mellifera 3.3
Caenorhabditis elegans 3.9
Canis familiaris 7.3
Ciona intestinalis 1.6
Danio rerio 6.7
Drosophila melanogaster 1.3
Fugu rubripes 4.7
Gallus gallus 6.1
Homo sapiens 30.8
Mus musculus 9.5
Pan troglodytes 5.8
Rattus norvegicus 6.6
Saccharomyces cerevisiae 0.1
Tetraodon nigroviridis 3.7
Xenopus tropicalis 5.9
Multi-species  
Compara 22.1
GO 2.2
Mart 36.5
Total 160.2

 

© 2009 WTSI / EBI. Ensembl is available to download for public use - please see the code licence for details.

                
Ensembl v35 - Nov 2005
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